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Group: LOCI

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This component provides backwards build compatibility for projects structured to use the old loci-common.jar. All code from loci-common has migrated to the scifio component, under new package names (ome.scifio.common, ome.scifio.enumeration, ome.scifio.io, ome.scifio.services and ome.scifio.xml). A new loci-legacy component provides delegator classes with the old package name (loci.common.*) for backwards compatibility. This loci-common component is merely a copy of loci-legacy.jar, and is intended for use ...
Last Release on Jun 19, 2013
A library for working with OME-XML metadata structures.
Last Release on Jun 19, 2013
The loci-legacy component preserves classic bio-formats package structures as classes and components are moved to SCIFIO. For example, if loci.formats.Sample.java is migrated from the bio-formats component to ome.scifio.Sample.java in the scifio component, then a loci.formats.Sample.java would also be added to loci-legacy. This class would be an empty delegator and would pass all control to the ome.scifio class. (thus loci-legacy depends only the scifio component) All delegators should use a ...
Last Release on Jun 19, 2013

4. SCIFIO12 usages

loci » scifioBSD

SCientific Image Format Input and Output: an open source framework for reading and writing scientific image file formats, and converting metadata between standards.
Last Release on Jun 19, 2013
A library for reading and writing popular microscopy file formats.
Last Release on Jun 19, 2013
SCIFIO-devel is a necessary intermediate component as legacy classes are converted to SCIFIO components and package structures. As classes are converted from the SCIFIO component (or from loci-common, or other legacy components) they are placed in SCIFIO-devel, removed from their original component, and a delegator with the original package and class name is placed in the loci-legacy component, to preserve the API for backwards-compatibility while passing functional control to SCIFIO-devel. Thus loci-legacy ...
Last Release on Jun 19, 2013
Java API to handle JPEG and JPEG2000 files. Used by Bio-Formats to read images compressed with JPEG2000 and lossless JPEG. Modified from the 2008-10-14 source to include support for the YCbCr color space. Several files in the com.sun.media.jai packages were removed, as they are not needed by Bio-Formats, and created an additional dependency. This component will be removed once our changes have been added to the official JAI CVS repository.
Last Release on Jun 19, 2013
Stub of proprietary Java API to handle Luratech LWF compression. Required to compile Bio-Formats's support for Luratech LWF compression for the Opera Flex format.
Last Release on Jun 19, 2013
A collection of plugins for ImageJ, including the Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, Data Browser and Stack Slicer.
Last Release on Jun 19, 2013


10. OME I/O2 usages

loci » ome-ioGPL

A library for OME database import, upload and download.
Last Release on Jun 19, 2013
Java bindings and pre-built binaries for libjpeg-turbo.
Last Release on Jun 19, 2013
Java API to handle Microsoft MDB format (Access). Used by Bio-Formats for Zeiss LSM metadata in MDB files.
Last Release on Jun 19, 2013
Java API to handle Microsoft OLE 2 Compound Document format (Word, Excel). Based on poi-2.5.1-final-20040804.jar, with bugfixes for OLE v2 and memory efficiency improvements. Used by Bio-Formats for OLE support (cxd, ipw, oib, zvi). Used by VisBio overlays logic for XLS export feature.
Last Release on Jun 19, 2013
A collection of plugins for ImageJ, including the Download from OME and Upload to OME plugins.
Last Release on Jun 19, 2013
The OME Data Model specification
Last Release on Jun 19, 2013

16. Jar2Lib1 usages

loci » jar2libBSD

A command line tool for generating C++ proxy classes corresponding to a Java library.
Last Release on Sep 26, 2012

17. Metakit1 usages

loci » metakitGPL

A library for reading Metakit database files.
Last Release on Jun 19, 2013

18. XSD FU

loci » xsd-fuGPL

Model code generation from XML schema
Last Release on Jun 19, 2013

19. OME Notes

loci » ome-notesGPL

A library for flexible organization and presentation of OME-XML metadata within a graphical browser and editor interface.
Last Release on Sep 22, 2014
Package for generating other code, particularly the Bio-Formats metadata documentation.
Last Release on Jun 19, 2013