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Group: EPFL BIOP

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Repo containing extra settings that can be stored in spimdata file format
Last Release on Oct 18, 2021
Commands and function for opening, conversion and easy use of bioformats format into BigDataViewer
Last Release on Sep 25, 2021
Selector Behaviours for BigDataViewer
Last Release on Sep 25, 2021
Wrappers for ImageJ: Elastix, Transformix, Ilastik (add next here).
Last Release on Nov 1, 2021
Server to launch elastix and transformix tasks
Last Release on Jun 23, 2021
Big data viewer tools BIOP - EPFL
Last Release on Nov 17, 2021
A repo that helps the declaration of Scijava Commands from Python
Last Release on Sep 26, 2021
Hold your horses
Last Release on Nov 9, 2021

9. Atlases1 usages

ch.epfl.biop » atlasBSD

Repo containing a standard API for Atlases and some example ones
Last Release on Nov 21, 2021

10. BIOP Kheops Command

ch.epfl.biop » ijp-kheopsGPL

IJ2 command make use of bioformats convert to create pyramidal ome.tiff
Last Release on Sep 26, 2021
QuPath Extension Warpy
Last Release on Nov 4, 2021
Collection of tools to register images to atlases in FIJI.
Last Release on Nov 21, 2021
A nice project implementing an OMERO connection with ImageJ
Last Release on Oct 15, 2021

14. LaRoMe

ch.epfl.biop » LaRoMeGPL

LaRoMe - BIOP - EPFL
Last Release on Oct 13, 2021
Group EPFL BIOP Imaris