Artifacts using Corpus Storage System (12)

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JCoRe DB Test Utilities

A Collection Reader that converts XML, stored in a database, to CAS objects. The conversion is the same employed by the jcore-xml-reader, making use of the jcore-xml-mapper. The reader requires a configuration file which determines the database connection, the table schema and the PostgreSQL schema (namespace) to use.

This is a JeDIS component. It can be used to set the 'last component' column in a subset table. This help to keep track of the pipeline status.

Reads CAS XMI data from a relational database (Postgres). Thus, the stored CASes may then be processed further.

Abstract database reader for database driven processing

Writes CAS data in XMI format into a relational (PostgreSQL) database. It is possible to write the whole XMI for each document into the database. However, it is also possible to define a list of annotations that should be written into separate tables. The JCoRe XMI Database Reader can then be used to assemble XMI data from a given set of annotations.

JULIELab Topic Modeling

A reader for the BioC format used by GNormPlus. Reads the text and the annotations, both species and genes.

This project assembles code and files required to build the dictionaries and indexes used by the JCoRe Gene Mapper.

This project assembles code and files required to build the dictionaries and indexes used by the Gene Mapper.