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Artifacts using Corpus Storage System (8)

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JCoRe DB Test Utilities
Last Release on Dec 30, 2018
Abstract database reader for database driven processing
Last Release on Mar 29, 2019
A Collection Reader that converts XML, stored in a database, to CAS objects. The conversion is the same employed by the jcore-xml-reader, making use of the jcore-xml-mapper. The reader requires a configuration file which determines the database connection, the table schema and the PostgreSQL schema (namespace) to use.
Last Release on Mar 29, 2019
Reads CAS XMI data from a relational database (Postgres). Thus, the stored CASes may then be processed further.
Last Release on Mar 29, 2019
Writes CAS data in XMI format into a relational (PostgreSQL) database. It is possible to write the whole XMI for each document into the database. However, it is also possible to define a list of annotations that should be written into separate tables. The JCoRe XMI Database Reader can then be used to assemble XMI data from a given set of annotations.
Last Release on Mar 29, 2019
JULIELab Topic Modeling
Last Release on Dec 25, 2018
This is a JeDIS component. It can be used to set the 'last component' column in a subset table. This help to keep track of the pipeline status.
Last Release on Mar 29, 2019


An instantiation of the jcore-db-reader that uses the jcore-xml-mapper to retrieve and parse MEDLINE XML from a PostgreSQL database. The XML format of retrieved documents is expected to follow the MEDLINE XML schema that was used until inclusive 2016. I.e. the root element of MEDLINE documents must be MedlineCitation and not, as it is since 2017, PubmedArticle.
Last Release on Apr 1, 2019