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Toolkit to analyze genomic variation data, built on the GATK with Clojure

LicenseMIT
Tagsclojure
HomePage https://github.com/chapmanb/bcbio.variation
DateSep 03, 2014
Filespom (12 KB)  jar (254 KB)  View All
RepositoriesClojars
Ranking#436096 in MvnRepository (See Top Artifacts)
VulnerabilitiesVulnerabilities from dependencies:
CVE-2017-1000190

Note: There is a new version for this artifact

New Version0.0.8


Note: this artifact is located at Clojars repository (https://clojars.org/repo/)

Compile Dependencies (42)

Category/License Group / ArtifactVersionUpdates
JDBC Pool
EPL 1.0LGPL 2.1
c3p0 » c3p0 0.9.1.20.9.5.5

EPL 1.0
clj-aws-s3 » clj-aws-s3 0.3.10.3.10

MIT
clj-blend » clj-blend0.1.1-20131111.190404-50.1.0

clj-genomespace » clj-genomespace 0.1.3

MIT
clj-stacktrace » clj-stacktrace 0.2.50.2.8
Date/Time
MIT
clj-time » clj-time 0.4.30.15.2
YAML
clj-yaml » clj-yaml 0.3.10.4.0
Vector/Matrix Libs
colt » colt 1.2.0

com.leadtune » clj-ml 0.2.40.2.6

MIT
de.kotka » lazymap 3.1.03.1.1

EPL 1.0
doric » doric 0.8.00.9.0

EPL 1.0
enlive » enlive 1.0.11.1.6

EPL 1.0
fs » fs 1.1.21.3.3

EPL 1.0
hiccup » hiccup 1.0.11.0.5

EPL 1.0
incanter » incanter-core 1.4.01.9.3

EPL 1.0
incanter » incanter-charts 1.4.01.9.3

EPL 1.0
incanter » incanter-excel 1.4.01.9.3

EPL 1.0
lonocloud » synthread 1.0.31.4.0
Machine Learning
GPL 3.0
nz.ac.waikato.cms.weka » weka-stable 3.6.63.8.6

EPL 1.0
ordered » ordered 1.3.2
Expression Lang
Apache 2.0
org.apache.commons » commons-jexl 2.1.1
Math Lib
Apache 2.0
org.apache.commons » commons-math 2.23.6.1

LGPL 2.1
org.biojava » biojava3-core3.0.43.0

org.biojava » biojava3-alignment 3.0.4

org.clojars.chapmanb » gatk-lite 2.3.42.8.1

org.clojars.chapmanb » picard 1.731.112

org.clojars.chapmanb » sam 1.731.107

org.clojars.chapmanb » tribble 119

org.clojars.chapmanb » jama 1.0.2

LGPL 3.0
org.clojars.chapmanb » snpeff 3.1

org.clojars.chapmanb » circdesigna 0.0.2

org.clojars.chapmanb » fast-random-forest 0.98
JVM Languages
EPL 1.0
org.clojure » clojure 1.5.11.11.1

EPL 1.0
org.clojure » math.combinatorics 0.0.20.1.6
CSV
EPL 1.0
org.clojure » data.csv 0.1.21.0.1

EPL 1.0
org.clojure » core.match 0.2.0-alpha91.0.0
CLI Parser
EPL 1.0
org.clojure » tools.cli 0.2.21.0.206

EPL 1.0
org.clojure » java.jdbc 0.2.20.7.12
Reflection
Apache 2.0
org.reflections » reflections 0.9.80.10.2

Apache 2.0
org.simpleframework » simple-xml1 vulnerability 2.0.42.7.1
JDBC Driver
Apache 2.0
org.xerial » sqlite-jdbc 3.7.23.39.3.0

EPL 1.0
pallet-fsm » pallet-fsm 0.1.00.2.0

Test Dependencies (3)

Category/License Group / ArtifactVersionUpdates

EPL 1.0
clojure-complete » clojure-complete 0.2.30.2.5
Mocking
MIT
midje » midje 1.5-RC11.10.5
REPL
EPL 1.0
org.clojure » tools.nrepl 0.2.30.2.13