Group: Scif

SCIFIO is a library for scientific N-dimensional image I/O.

Compatibility layer for using un-converted Bio-Formats readers in SCIFIO applications.

SCIFIO support for the OME data model, including OME-XML and OME-TIFF.

Obsolete parent POM. Extend scijava:pom-scijava instead!

Pluggable command-line tools for performing SCIFIO-based image IO operations.

Java API to handle JPEG and JPEG2000 files. Used by Bio-Formats to read images compressed with JPEG2000 and lossless JPEG. Modified from the 2008-10-14 source to include support for the YCbCr color space. Several files in the com.sun.media.jai packages were removed, as they are not needed by Bio-Formats, and created an additional dependency. This project can be removed once our changes have been added to the official JAI CVS repository.

Provides SCIFIO support for proprietary life science formats.

OME XML Formats Extension

A SCIFIO Format implementation which provides transparent access to image pixels on an OMERO server.

SCIFIO plugins for HDF5-based formats.

Pluggable command-line tools for performing SCIFIO-based image IO operations.

Tutorials on using the basic SCIFIO API.

Java API to handle JPEG and JPEG2000 files. Used by Bio-Formats to read images compressed with JPEG2000 and lossless JPEG. Modified from the 2008-10-14 source to include support for the YCbCr color space. Several files in the com.sun.media.jai packages were removed, as they are not needed by Bio-Formats, and created an additional dependency. This project can be removed once our changes have been added to the official JAI CVS repository.

Provides SCIFIO support for proprietary life science formats.

SCIFIO Bill of Materials

Bridge class allowing SCIFIO readers and writers to be used as ITK ImageIO.

SCIFIO support for the OME data model (OME-XML and OME-TIFF).

I/O interfaces for ImgLib2 labelings.

Tutorials on using the basic OME SCIFIO plugin.

Provides SCIFIO Format conversions of all proprietary Bio-Formats readers and metadata.