Artifacts using workflow-api version 3.0-RC

Tab Tools

Workflow Base

Tools to manage RDF export from ONDEX graphs. See src/main/java/net/sourceforge/ondex/rdf/export/package-info.java for details.

An ONDEX Exporter plugin that exports Ondex Graph data to a JSON file ideal for cytoscapeJS, containing JSON objects which contain data related to concepts (nodes), relations (edges) and other Item Info. (metadata) including Data Sources, Types, Concept Classes, Relation Types, Evidences, Units and more.

A plug-in for the Integrator, which uses a simple XML to map from a particular TSV/CSV file structure (i.e., list of headers) to ONDEX entities.

An ONDEX Exporter plugin that exports Ondex Graph data to a JSON file containing JSON objects which contain data related to concepts (nodes), relations (edges) and other Item Info. (metadata) including Data Sources, Types, Concept Classes, Relation Types, Evidences, Units and more.

Various integration tests of ONDEX Mini workflows. TODO: maybe it will require splitting into submodules in future. Keeping it simple for the moment.

Modules

ONDEX Optional Modules

An Integrator plug-in that allows for invoking a Javascript file from an Integrator workflow. Comes with ONDEX entities available inside the scripting engine, so that you can run the same scripts that are available from the ONDEX Console component. See examples in src/test/resources. You can specify a script to run in a workflow step, as plug-in parameter. Similarly, you can pass parameters to the script, by defining them in the workflow configuration, the script will see them as a global ...