Artifacts using workflow-api version 3.0

Tab Tools

Workflow Base

Tools to manage RDF export from ONDEX graphs. See src/main/java/net/sourceforge/ondex/rdf/export/package-info.java for details.

An ONDEX Exporter plugin that exports Ondex Graph data to a JSON file ideal for cytoscapeJS, containing JSON objects which contain data related to concepts (nodes), relations (edges) and other Item Info. (metadata) including Data Sources, Types, Concept Classes, Relation Types, Evidences, Units and more.

Cypher Client KnetMiner Cypher Client

A plug-in for the Integrator, which uses a simple XML to map from a particular TSV/CSV file structure (i.e., list of headers) to ONDEX entities.

An implementation of the Knetminer API web service based on Ondex.

An ONDEX Exporter plugin that exports Ondex Graph data to a JSON file containing JSON objects which contain data related to concepts (nodes), relations (edges) and other Item Info. (metadata) including Data Sources, Types, Concept Classes, Relation Types, Evidences, Units and more.

Various integration tests of ONDEX Mini workflows. TODO: maybe it will require splitting into submodules in future. Keeping it simple for the moment.

Modules