Group: Bioimageanalysis Icy

Icy is an open community platform for bioimage informatics

The swiss army knife of plugin developers. Automatically generates elegant graphical interfaces with rich and intuitive user interaction based on your algorithm’s parameters.

Insubstantial project (https://github.com/Insubstantial) clone for Icy (fixes + minors customizations). Previous version of the repository can be found at https://github.com/Icy-imaging/Icy-Insubstantial

BioFormats library patched to include custom version of Apache commons IO and JSON libraries

A tool to parse the javadoc of a file. Mostly used now by the Script Editor.

Icy VTK

This project holds the code allowing the interaction between Java and Deep Learning frameworks.

Protocols (GUI part) plugin for Icy

Parent POM for all Icy core related projects (Icy-Kernel and customized libraries used for Icy-Kernel)

The Java Native Access (JNA) library for Icy

Common parent POM for all Icy related projects

The Google Gson library for Icy.

The Apache Commons Logging Library.

This project complements the DL-model runner acting as the engine that works loading models and making inference with Java API for Onnx.

Common parent POM for all Icy related projects

Core Library developed by our lab for 3D image processing and analysis.

Parent POM for all Icy plugin projects

The Apache POI library. POI is a library dedicated to reading/writing Microsoft Office and compatible documents (Word, Excel, Powerpoint)

Use deep learning frameworks from Java in an agnostic and isolated way.

Deeplearning4J library for Icy (https://deeplearning4j.konduit.ai/)