Group: BioJava

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BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.
Last Release on May 6, 2011
Biojava3 Protmod
Last Release on Sep 18, 2024
This module is for predicting disordered regions in protein sequences
Last Release on Sep 18, 2024
Biojava3 Alignment
Last Release on Sep 18, 2024

5. Biojava3 AA Prop

org.biojava » biojava3-aa-propLGPL

Biojava3 AA Prop
Last Release on Sep 18, 2024
Protein Comparison Tool
Last Release on Sep 18, 2024
The protein structure modules of BioJava.
Last Release on Sep 18, 2024
Biojava3 Phylo
Last Release on Sep 18, 2024

9. BioJava Legacy

org.biojava » biojava-legacyLGPL

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.
Last Release on Sep 18, 2023

10. Blast

org.biojava » blastLGPL

BioJava blast module
Last Release on Sep 18, 2023

11. Alignment5 usages

org.biojava » alignmentLGPL

BioJava alignment module
Last Release on Sep 18, 2023
Biojava3 Sequencing
Last Release on Sep 18, 2024
Biojava3 Structure GUI
Last Release on Sep 18, 2024

14. Phylo6 usages

org.biojava » phyloLGPL

BioJava phylo module
Last Release on Sep 18, 2023
Biojava3 Ontology
Last Release on Sep 18, 2024

16. Biojava3 Modfinder

org.biojava » biojava3-modfinderLGPL

Biojava3 Modfinder
Last Release on Sep 18, 2024

17. DAS

org.biojava » das

DAS
Last Release on Sep 18, 2024

18. Protein Sequence GUI

org.biojava » sequenceui

A GUI for showing protein sequences
Last Release on Sep 18, 2024

19. Biosql

org.biojava » biosqlLGPL

BioJava biosql module
Last Release on Sep 18, 2023

20. GUI

org.biojava » guiLGPL

BioJava gui module
Last Release on Sep 18, 2023