Home » org.renjin.bioconductor » SingleCellExperiment » 1.2.0-b5

SingleCellExperiment » 1.2.0-b5

Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.

LicenseGPL 3.0
Tagsrlang
DateApr 29, 2022
Filespom (7 KB)  jar (377 KB)  View All
RepositoriesBeDataDriven
Ranking#54974 in MvnRepository (See Top Artifacts)
Used By7 artifacts


Note: this artifact is located at BeDataDriven repository (https://nexus.bedatadriven.com/content/groups/public/)

Compile Dependencies (21)

Category/License Group / ArtifactVersionUpdates

org.renjin » tcltk 0.9.26890.9.2726

org.renjin » methods 0.9.26890.9.2724

org.renjin » graphics 0.9.26890.9.2724

org.renjin » datasets 0.9.26890.9.2724

org.renjin » splines 0.9.26890.9.2723

org.renjin » grDevices 0.9.26890.9.2724

org.renjin » tools 0.9.26890.9.2726

org.renjin » stats 0.9.26890.9.2724

org.renjin » parallel 0.9.26890.9.2723

org.renjin » utils 0.9.26890.9.2726

org.renjin » grid 0.9.26890.9.2726

org.renjin » stats4 0.9.26890.9.2726

Artistic 2.0		org.renjin.bioconductor » S4Vectors 0.18.3-b7 ✔

Artistic 2.0		org.renjin.bioconductor » SummarizedExperiment 1.10.1-b3 ✔

Artistic 2.0		org.renjin.bioconductor » BiocGenerics 0.26.0-b140.26.0-b15

Artistic 2.0		org.renjin.bioconductor » BiocStyle (optional) 2.8.2-b3 ✔

MIT		org.renjin.cran » testthat (optional) 1.0.2-renjin-17 ✔

GPL		org.renjin.cran » knitr (optional) 1.20-b121.22-b1

GPL 3.0		org.renjin.cran » rmarkdown (optional) 1.10-b31.12-b1

MIT		org.renjin.cran » magrittr (optional) 1.5-b3511.5-b364

org.renjin.cran » Rtsne (optional) 0.13-b200.15-b1

Provided Dependencies (1)

Category/License Group / ArtifactVersionUpdates

org.renjin » compiler 0.9.26890.9.2724

Licenses

LicenseURL
GPL-3

Developers

NameEmailDev IdRolesOrganization
Aaron Lun [aut
cph]
Davide Risso [aut
cre
cph]
Keegan Korthauer [ctb]