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Group: Fiji

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Utility classes for Fiji-based projects.
Last Release on May 2, 2017
Helpers to use BigDataViewer as quick visualization in other projects
Last Release on Sep 10, 2019
BigDataViewer core classes with minimal dependencies.
Last Release on May 15, 2019
This project serves purely for phasing out ImgLib1 in favor of ImgLib2.
Last Release on Jul 2, 2018

5. 3D Viewer16 usages

sc.fiji » 3D_ViewerGPL

3D Viewer for visualizing image stacks three-dimensionally.
Last Release on May 2, 2017

6. SPIM Data15 usages

sc.fiji » spim_dataBSD

representation of multi-angle, multi-channel (etc.) SPIM images and their registration
Last Release on Aug 22, 2019
Analysis of 2D and 3D skeleton images.
Last Release on Jul 1, 2019

8. VIB Library12 usages

sc.fiji » VIB-libGPL

Support library for all the VIB stuff.
Last Release on Dec 26, 2017
Imagescience
Last Release on Aug 21, 2015


Skeletonize3D plugin for Fiji.
Last Release on Apr 30, 2017

11. TrackMate10 usages

sc.fiji » TrackMate_GPL

TrackMate plugin for Fiji.
Last Release on Sep 5, 2019

12. TrakEM210 usages

sc.fiji » TrakEM2_GPL

TrakEM2 plugin for ImageJ.
Last Release on Oct 26, 2018
Fiji Plugins plugin for Fiji.
Last Release on Apr 30, 2017

14. VIB8 usages

sc.fiji » VIB_GPL

VIB plugin for Fiji.
Last Release on Apr 30, 2017
Trainable Segmentation plugin for Fiji.
Last Release on May 13, 2019
Local Thickness is used to compute the local thickness of a 3D image stack.
Last Release on Apr 30, 2017
Auto Threshold plugin for Fiji.
Last Release on Apr 9, 2018
PAL: Phylogenetic Analysis Library
Last Release on May 2, 2017
MPICBG TrakEM2
Last Release on May 16, 2016

20. Image5D4 usages

sc.fiji » Image_5DBSD

The Image5D plugins extend image stacks to 5 dimensions: x, y, channel (color), slice (z), frame (t).
Last Release on Apr 30, 2017