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Group: Fiji
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1. BigDataViewer Visualization Tools88 usages

sc.fiji » bigdataviewer-vistoolsBSD

Helpers to use BigDataViewer as quick visualization in other projects
Last Release on Jun 13, 2024

2. BigDataViewer Core88 usages

sc.fiji » bigdataviewer-coreBSD

BigDataViewer core classes with minimal dependencies.
Last Release on Feb 25, 2025

3. Fiji Lib57 usages

sc.fiji » fiji-libGPL

Utility classes for Fiji-based projects.
Last Release on Jan 27, 2024

4. SPIM Data51 usages

sc.fiji » spim_dataBSD

representation of multi-angle, multi-channel (etc.) SPIM images and their registration
Last Release on Jul 23, 2024

5. 3D Viewer33 usages

sc.fiji » 3D_ViewerGPL

3D Viewer for visualizing image stacks three-dimensionally.
Last Release on Sep 28, 2024

6. TrackMate30 usages

sc.fiji » TrackMateGPL

TrackMate plugin for Fiji.
Last Release on Jan 27, 2024

7. Analyze Skeleton28 usages

sc.fiji » AnalyzeSkeleton_GPL

Analysis of 2D and 3D skeleton images.
Last Release on Oct 20, 2020

8. Trainable Segmentation22 usages

sc.fiji » Trainable_SegmentationGPL

Trainable Segmentation plugin for Fiji.
Last Release on Sep 28, 2024

9. Legacy ImgLib121 usages

sc.fiji » legacy-imglib1BSDGPL

This project serves purely for phasing out ImgLib1 in favor of ImgLib2.
Last Release on Sep 28, 2024

10. TrackMate21 usages

sc.fiji » TrackMate_GPL

TrackMate plugin for Fiji.
Last Release on Sep 1, 2020

Relocated → sc.fiji » TrackMate

11. Fiji Plugins20 usages

sc.fiji » Fiji_PluginsGPL

Fiji Plugins plugin for Fiji.
Last Release on Jan 27, 2024

12. VIB Library19 usages

sc.fiji » VIB-libGPL

Support library for all the VIB stuff.
Last Release on Jan 27, 2024

13. Skeletonize3D18 usages

sc.fiji » Skeletonize3D_GPL

Skeletonize3D plugin for Fiji.
Last Release on Apr 30, 2017

14. Imagescience17 usages

sc.fiji » imagescience

Imagescience
Last Release on Aug 21, 2015

15. BigDataViewer Fiji14 usages

sc.fiji » bigdataviewer_fijiGPL

Fiji plugins for starting BigDataViewer and exporting data.
Last Release on Dec 3, 2021

16. IO12 usages

sc.fiji » IO_GPL

IO plugin for Fiji.
Last Release on Mar 13, 2025

17. TrakEM212 usages

sc.fiji » TrakEM2_GPL

TrakEM2 plugin for ImageJ.
Last Release on Jan 18, 2024

18. BUnwarpJ11 usages

sc.fiji » bUnwarpJ_GPL

bUnwarpJ plugin for Fiji.
Last Release on Nov 13, 2019

19. Coloc 210 usages

sc.fiji » Colocalisation_AnalysisGPL

Fiji's plugin for colocalization analysis.
Last Release on May 10, 2023

20. Auto Local Threshold10 usages

sc.fiji » Auto_Local_ThresholdGPL

Auto Local Threshold plugin for Fiji.
Last Release on Oct 23, 2021