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Combine multidimensional arrays into a single array. This is a generalization of 'cbind' and 'rbind'. Works with vectors, matrices, and higher-dimensional arrays. Also provides functions 'adrop', 'asub', and 'afill' for manipulating, extracting and replacing data in arrays.
Last Release on Nov 4, 2024
Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.
Last Release on Feb 16, 2021
Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.
Last Release on Apr 28, 2022
Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.
Last Release on Apr 29, 2022
Define coerce methods for microarray data objects.
Last Release on Nov 4, 2024
representation of public golub data with some covariate data of provenance unknown to the maintainer at present; now employs ExpressionSet format
Last Release on Apr 29, 2022
Xpose is collection of packages to be used as a model building aid for non-linear mixed effects (population) analysis using NONMEM. It facilitates data set checkout, exploration and visualization, model diagnostics, candidate covariate identification and model comparison. xpose4data is a package containing functions for reading in data from NONMEM, support functions, as well as class definitions.
Last Release on Feb 15, 2021
Exploratory data analysis and manipulation functions for multi- label data sets along with an interactive Shiny application to ease their use.
Last Release on Apr 30, 2022
This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers the efficient operations specifically designed for integers with less than 8 bits, since a single genetic/genomic ...
Last Release on Feb 16, 2021
Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.
Last Release on Feb 15, 2021