A Java API for high-throughput sequencing data (HTS) formats

Artifacts using htsjdk version 1.134 (4)
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A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Apr 13, 2025
GATK Utilities
Last Release on Jun 12, 2018
GATK Package Distribution
Last Release on Jun 12, 2018
GATK Package Internal
Last Release on Jun 12, 2018
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