A Java API for high-throughput sequencing data (HTS) formats

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A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.
Last Release on Apr 23, 2018
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Apr 13, 2025
Parallel merging, squaring off and ensemble calling for genomic variants.
Last Release on Dec 29, 2018
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