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HTSJDK » 2.16.1

A Java API for high-throughput sequencing data (HTS) formats

Artifacts using htsjdk version 2.16.1 (11)
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1.ADAM_2.12: Core22 usages

org.bdgenomics.adam » adam-core-spark2 Apache

ADAM_2.12: Core
Last Release on Dec 16, 2020

2.Picard18 usages

com.github.broadinstitute » picard MIT

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Apr 13, 2025

3.DSH Compress17 usages

org.dishevelled » dsh-compress LGPL

Compression utility classes.
Last Release on Jun 20, 2026

4.Disq4 usages

org.disq-bio » disq MIT

A library for manipulating bioinformatics sequencing formats in Apache Spark.
Last Release on May 3, 2021

5.GATK43 usages

org.broadinstitute » gatk Apache

Development on GATK 4
Last Release on Apr 15, 2025

6.Big Data Genomics: Convert HTSJDK2 usages

org.bdgenomics.convert » convert-htsjdk Apache

Conversions between HTSJDK and Big Data Genomics Avro Formats
Last Release on May 19, 2022

7.Dagr Tasks2 usages

com.fulcrumgenomics » dagr-tasks MIT

A set of example dagr tasks.
Last Release on Mar 12, 2022

8.Mango: CORE1 usages

org.bdgenomics.mango » mango-core Apache

Mango: CORE
Last Release on Oct 4, 2019

9.Fgbio1 usages

com.fulcrumgenomics » fgbio MIT

fgbio
Last Release on May 21, 2026

10.Haplogrep

genepi » haplogrep

Haplogrep
Last Release on Sep 17, 2024