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HTSJDK » 2.19.0

A Java API for high-throughput sequencing data (HTS) formats

Artifacts using htsjdk version 2.19.0 (14)
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1.ADAM_2.12: Core22 usages

org.bdgenomics.adam » adam-core-spark2 Apache

ADAM_2.12: Core
Last Release on Dec 16, 2020

2.Picard18 usages

com.github.broadinstitute » picard MIT

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Apr 13, 2025

3.ADAM_2.12: Core9 usages

org.bdgenomics.adam » adam-core-spark3 Apache

ADAM_2.12: Core
Last Release on Jan 4, 2024

4.Disq4 usages

org.disq-bio » disq MIT

A library for manipulating bioinformatics sequencing formats in Apache Spark.
Last Release on May 3, 2021

5.GATK43 usages

org.broadinstitute » gatk Apache

Development on GATK 4
Last Release on Apr 15, 2025

6.TASSEL2 usages

net.maizegenetics » tassel LGPL

TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.
Last Release on Mar 31, 2025

7.DSH Bio Convert HTSJDK1 usages

org.dishevelled » dsh-bio-convert-htsjdk LGPL

Convert between dishevelled and htsjdk data models.
Last Release on Mar 7, 2023

8.Lame1 usages

io.github.pityka » lame MIT

lame
Last Release on Apr 4, 2021

9.Mango: CORE1 usages

org.bdgenomics.mango » mango-core Apache

Mango: CORE
Last Release on Oct 4, 2019

10.Fgbio1 usages

com.fulcrumgenomics » fgbio MIT

fgbio
Last Release on May 21, 2026