A Java API for high-throughput sequencing data (HTS) formats

Artifacts using htsjdk version 2.2.2 (2)
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A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Aug 1, 2026
Development on GATK 4
Last Release on Aug 19, 2026
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