A Java API for high-throughput sequencing data (HTS) formats

Artifacts using htsjdk version 2.24.0 (6)
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A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Aug 1, 2026
Compression utility classes.
Last Release on Aug 26, 2026
Development on GATK 4
Last Release on Aug 19, 2026
Conversions between HTSJDK and Big Data Genomics Avro Formats
Last Release on May 19, 2022
Convert between dishevelled and htsjdk data models.
Last Release on Mar 7, 2023
Development on GATK 4
Last Release on Aug 19, 2026
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