
A Java API for high-throughput sequencing data (HTS) formats

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Aug 1, 2026

Compression utility classes.
Last Release on Aug 26, 2026

Development on GATK 4
Last Release on Aug 19, 2026

Conversions between HTSJDK and Big Data Genomics Avro Formats
Last Release on May 19, 2022

Convert between dishevelled and htsjdk data models.
Last Release on Mar 7, 2023

Development on GATK 4
Last Release on Aug 19, 2026