Home » com.github.samtools » htsjdk » Usages

Artifacts using HTSJDK (129)
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1. Core Genometry (Data Models)44 usages

org.lorainelab.igb » genometry

Core Genometry (Data Models)
Last Release on May 6, 2025

2. NGS Utilities37 usages

com.github.biopet » ngs-utilsMIT

ngs-utils
Last Release on Oct 25, 2018

3. Hadoop BAM26 usages

org.seqdoop » hadoop-bamMIT

A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.
Last Release on Apr 23, 2018

4. Biodata Models25 usages

org.opencb.biodata » biodata-modelsApache

Biological entities and their equivalents in different file formats typically used in bioinformatics
Last Release on Sep 5, 2025

5. ADAM_2.12: Core22 usages

org.bdgenomics.adam » adam-core-spark2Apache

ADAM_2.12: Core
Last Release on Dec 16, 2020

6. Biodata Formats19 usages

org.opencb.biodata » biodata-formatsApache

Biological entities and their equivalents in different file formats typically used in bioinformatics
Last Release on Sep 5, 2025

7. Picard18 usages

com.github.broadinstitute » picardMIT

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Apr 13, 2025

8. DSH Compress17 usages

org.dishevelled » dsh-compressLGPL

Compression utility classes.
Last Release on Nov 7, 2025

9. Biodata Tools14 usages

org.opencb.biodata » biodata-toolsApache

Biological entities and their equivalents in different file formats typically used in bioinformatics
Last Release on Sep 5, 2025

10. OpenCGA Core12 usages

org.opencb.opencga » opencga-coreApache

OpenCGA Core
Last Release on Aug 7, 2025