Group: Charite Compbio
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1.Jannovar Core9 usages

de.charite.compbio » jannovar-core BSD

jannovar-core is a library for the functional annotation of genomic variants
Last Release on Sep 13, 2022

2.Jannovar HTSJDK3 usages

de.charite.compbio » jannovar-htsjdk BSD

jannovar-htsjdk is the module for bridging between Jannovar and HTSJDK
Last Release on Sep 13, 2022

3.Jannovar HGVS2 usages

de.charite.compbio » jannovar-hgvs BSD

parsing and representing HGVS annotations
Last Release on Sep 13, 2022

4.Jannovar

de.charite.compbio » Jannovar BSD

Jannovar
Last Release on Sep 13, 2022

5.Jannovar CLI

de.charite.compbio » jannovar-cli BSD

jannovar-cli is the command line interface for Jannovar
Last Release on Sep 13, 2022

6.Jannovar Filter

de.charite.compbio » jannovar-filter BSD

jannovar-filter helps with applying threshold-based filters for WES/WGS filters
Last Release on Sep 13, 2022

7.Jannovar Stats

de.charite.compbio » jannovar-stats BSD

jannovar-stats helps in aggregating statistics about variants and variant annotations
Last Release on Sep 13, 2022

8.Jannovar Vardbs

de.charite.compbio » jannovar-vardbs BSD

jannovar-vardbs helps with using variant annotation databases, e.g. dbSNP
Last Release on Sep 13, 2022
Ontologizer Core Library
Last Release on Jan 19, 2018

10.HyperSMURF

de.charite.compbio » hyperSMURF GPL

Weka implementation of hyperSMURF using EasyEnsemble and SMOTE
Last Release on Jun 12, 2017
jannovar-inheritance-checker is a library to filter variantContext with inheritances
Last Release on Dec 19, 2016

12.JPEd CLI

de.charite.compbio » jped-cli BSD

jped-cli is the command line interface to jannovar-filter, for filtering VCF files for compatibility with a given pedigree and mode of inheritance
Last Release on Jan 4, 2016
Ontologizer Benchmarking JAR
Last Release on Jan 19, 2018

14.BOQA1 usages

de.charite.compbio » boqa

BOQA
Last Release on Dec 9, 2014
Ontologizer Singular Value Decomposition Extension
Last Release on Jan 19, 2018
Ontologizer Command Line Standalone Bundle
Last Release on Jan 19, 2018

17.Ontologizer GUI

de.charite.compbio » ontologizer-gui

Ontologizer GUI
Last Release on Jan 19, 2018
Ontologizer Parent Project
Last Release on Jan 19, 2018

19.Ontologizer Tests

de.charite.compbio » ontologizer-tests

Ontologizer Tests
Last Release on Jan 19, 2018