Indexed Artifacts (21.1M)

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Group: Charite Compbio

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Ontologizer Core Library
Last Release on Jan 19, 2018

2. Jannovar Core6 usages

de.charite.compbio » jannovar-coreBSD

jannovar-core is a library for the functional annotation of genomic variants
Last Release on Jun 9, 2021

3. Jannovar HTSJDK3 usages

de.charite.compbio » jannovar-htsjdkBSD

jannovar-htsjdk is the module for bridging between Jannovar and HTSJDK
Last Release on Jun 9, 2021

4. Jannovar HGVS2 usages

de.charite.compbio » jannovar-hgvsBSD

parsing and representing HGVS annotations
Last Release on Jun 9, 2021
Ontologizer Benchmarking JAR
Last Release on Jan 19, 2018
Ontologizer Singular Value Decomposition Extension
Last Release on Jan 19, 2018

7. BOQA1 usages

de.charite.compbio » boqa

BOQA
Last Release on Dec 9, 2014

8. HyperSMURF

de.charite.compbio » hyperSMURFGPL

Weka implementation of hyperSMURF using EasyEnsemble and SMOTE
Last Release on Jun 12, 2017
Ontologizer Command Line Standalone Bundle
Last Release on Jan 19, 2018

10. Jannovar Filter

de.charite.compbio » jannovar-filterBSD

jannovar-filter helps with applying threshold-based filters for WES/WGS filters
Last Release on Jun 9, 2021

11. Ontologizer Tests

de.charite.compbio » ontologizer-tests

Ontologizer Tests
Last Release on Jan 19, 2018

12. Jannovar

de.charite.compbio » JannovarBSD

Jannovar
Last Release on Jun 10, 2021

13. Jannovar CLI

de.charite.compbio » jannovar-cliBSD

jannovar-cli is the command line interface for Jannovar
Last Release on Jun 9, 2021

14. JPEd CLI

de.charite.compbio » jped-cliBSD

jped-cli is the command line interface to jannovar-filter, for filtering VCF files for compatibility with a given pedigree and mode of inheritance
Last Release on Jan 4, 2016

15. Ontologizer GUI

de.charite.compbio » ontologizer-gui

Ontologizer GUI
Last Release on Jan 19, 2018

16. Jannovar Vardbs

de.charite.compbio » jannovar-vardbsBSD

jannovar-vardbs helps with using variant annotation databases, e.g. dbSNP
Last Release on Jun 9, 2021
Ontologizer Parent Project
Last Release on Nov 9, 2020
jannovar-inheritance-checker is a library to filter variantContext with inheritances
Last Release on Dec 19, 2016

19. Jannovar Stats

de.charite.compbio » jannovar-statsBSD

jannovar-stats helps in aggregating statistics about variants and variant annotations
Last Release on Jun 9, 2021