Group: OME

A library for reading and writing popular microscopy file formats.

A collection of plugins for ImageJ, including the Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, Data Browser and Stack Slicer.

Reader and writer implementations that are BSD-licensed.

Top-level reader and writer APIs.

A library for working with OME-XML metadata structures.

Contains common I/O, date parsing, and XML processing classes.

The loci-legacy component preserves classic bio-formats package structures as classes and components are moved to SCIFIO. For example, if loci.formats.Sample.java is migrated from the bio-formats component to ome.scifio.Sample.java in the scifio component, then a loci.formats.Sample.java would also be added to loci-legacy. This class would be an empty delegator and would pass all control to the ome.scifio class. (thus loci-legacy depends only the scifio component) All delegators should use a ...

A library for reading and writing popular microscopy file formats.

Stub of proprietary Java API to handle Luratech LWF compression. Required to compile Bio-Formats's support for Luratech LWF compression for the Opera Flex format.

SCientific Image Format Input and Output: an open source framework for reading and writing scientific image file formats, and converting metadata between standards.

Java bindings and pre-built binaries for libjpeg-turbo.

Java API to handle JPEG and JPEG2000 files. Used by Bio-Formats to read images compressed with JPEG2000 and lossless JPEG. Modified from the 2008-10-14 source to include support for the YCbCr color space. Several files in the com.sun.media.jai packages were removed, as they are not needed by Bio-Formats, and created an additional dependency. This component will be removed once our changes have been added to the official JAI CVS repository.

A bundle of Bio-Formats and dependencies, without slf4j bindings.

Java bindings and pre-built native binaries for jxrlib.

Bio-Formats command line tools for reading and converting files

POM was created by Sonatype Nexus

Artifactory auto generated POM

SCIFIO-devel is a necessary intermediate component as legacy classes are converted to SCIFIO components and package structures. As classes are converted from the SCIFIO component (or from loci-common, or other legacy components) they are placed in SCIFIO-devel, removed from their original component, and a delegator with the original package and class name is placed in the loci-legacy component, to preserve the API for backwards-compatibility while passing functional control to SCIFIO-devel. Thus loci-legacy ...

The OME Data Model specification

A collection of plugins for ImageJ, including the Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions, Data Browser and Stack Slicer.