The protein structure modules of BioJava.

flexible scenegraphing and rendering for scientific visualisation

BioJava Modfinder

Core libraries shared among other modules

flexible scenegraphing and rendering for scientific visualisation

Canonical structure model and BioJava/OpenChemLib bridge for Starized.

BioJava AA Prop

A module which only has the purpose to run slow running integration tests. They can be executed by calling mvn verify

BioJava Structure GUI

The BioCommons library contains classes to work with 2D and 3D structural bioinformatics data. There are parsers for PDB and mmCIF files and many formats of 2D structure with classifications and notations used in the literature, as well as ...

Protein structure descriptors and alignment based on 3D Zernike moments.