Indexed Artifacts (24.1M)

Popular Categories

Group: Clojars Chapmanb

Sort: popular | newest

1. SAM5 usages

org.clojars.chapmanb » sam

Java API (SAM-JDK) for creating new programs that read and write SAM files http://picard.sourceforge.net/
Last Release on Mar 8, 2014

2. Picard5 usages

org.clojars.chapmanb » picard

Java API (SAM-JDK) for creating new programs that read and write SAM files http://picard.sourceforge.net/
Last Release on Aug 4, 2014
POM was created from install:install-file
Last Release on May 11, 2012

4. GATK Lite2 usages

org.clojars.chapmanb » gatk-lite

GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit
Last Release on Jan 15, 2014

5. Tribble2 usages

org.clojars.chapmanb » tribble

Java utilities for indexing and querying genomic file formats: http://code.google.com/p/tribble/
Last Release on Dec 20, 2012

6. Jama2 usages

org.clojars.chapmanb » jama

JAMA is a basic linear algebra package for Java. http://math.nist.gov/javanumerics/jama/
Last Release on Jul 27, 2012

7. Circdesigna2 usages

org.clojars.chapmanb » circdesigna

Synthetic biology design tool with support for extensible sequence constraints
Last Release on Oct 15, 2012

8. HTSJDK2 usages

org.clojars.chapmanb » htsjdk

A Java API for high-throughput sequencing data (HTS) formats. https://github.com/samtools/htsjdk
Last Release on Aug 4, 2014

9. Snpeff2 usages

org.clojars.chapmanb » snpeffLGPL

Variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).
Last Release on Dec 20, 2012

10. GATK Framework1 usages

org.clojars.chapmanb » gatk-framework

GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit
Last Release on Mar 8, 2014

11. SAM1 usages

org.clojars.chapmanb » variant

Java API for variation data, handling VCF and related formats http://picard.sourceforge.net/
Last Release on Mar 8, 2014

12. GATK Tools Public1 usages

org.clojars.chapmanb » gatk-tools-public

GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit
Last Release on Aug 4, 2014

13. GATK Engine1 usages

org.clojars.chapmanb » gatk-engine

GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit
Last Release on Aug 4, 2014

14. GATK Utilities1 usages

org.clojars.chapmanb » gatk-utils

GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit
Last Release on Aug 4, 2014

15. Cofoja

org.clojars.chapmanb » cofoja

POM was created from install:install-file
Last Release on Nov 1, 2012

16. Hadoop BAM

org.clojars.chapmanb » hadoop-bam

Java library for manipulation of BAM (Binary Alignment/Map) files using the Hadoop MapReduce framework
Last Release on Nov 9, 2011

17. Jnomics

org.clojars.chapmanb » jnomics

cloud-scale sequence analysis suite build on Hadoop http://jnomics.sourceforge.net
Last Release on Jan 22, 2012

18. Bigwig

org.clojars.chapmanb » bigwig

Java reader for UCSC BigWig / BigBed formats http://code.google.com/p/bigwig/
Last Release on Jun 5, 2013

19. GATK

org.clojars.chapmanb » gatk

GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit
Last Release on Jun 28, 2012