Group: LabKey Module

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The Experiment module provides annotation of experiments based on FuGE-OM standards. This module defines the XAR (eXperimental ARchive) file format for importing and exporting experiment data and annotations, and allows user-defined custom ...

Provides services and other APIs that assay modules call to implement custom assay types. Also includes implementation of the Standard Assay Type.

The Data Pipeline module uploads experiment data files to LabKey Server. You can track the progress of uploads and view log and output files.

Query

LDK

Laboratory

The Study module provides a variety of tools for integration of heterogeneous data types, such as demographic, clinical, and experimental data. Cohorts and participant groups are also supported by this module.

This is the core module for DISCVR-seq, which is a suite of modules to manage and analyze sequence data using LabKey.

A List is a flexible, user-defined table that is defined and managed via the LabKey Server web UI. The schema of a list can be defined manually, created using the schema of another list as a template, or inferred from the contents of a data file.

The Search module offers full-text search of server contents, implemented by Lucene.

A workgroup or user community can use LabKey message boards to post announcements and files and to carry on threaded discussions. A message board is useful for discussing ongoing work, answering questions and providing support, and posting documents ...

The API module provides services, base classes, utility classes and interfaces for LabKey server as well as modified versions of some third-party libraries

The Core module provides central services such as login, security, administration, folder management, user management, module upgrade, file attachments, analytics, and portal page management.

The FileContent module lets you securely share files on your LabKey Server and via WebDAV.

The LabKey Issues module provides an issue tracker, a centralized workflow system for tracking issues or tasks across the lifespan of a project. Users can use the issue tracker to assign tasks to themselves or others, and follow the task through the ...

LabKey Server's Proteomics tools (formerly the Computational Proteomics Analysis System, "CPAS") provide a web-based system for managing, analyzing, and sharing high volumes of tandem mass spectrometry data. It employs open-source tools provided by ...

Implements the core data visualization features, including box plots, scatter plots, and time charts.

A wiki is a hierarchical collection of documents that multiple users can edit. Wiki pages can be written in HTML, plain text or a specialized wiki language.

Audit

Support for using Microsoft SQLServer as LabKey Server's backend database and allows connecting to Oracle, SAS, and MySQL as an external data source.