Artifacts using Compiler (13,765)

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Lots of plots, various labeling, axis and color scaling functions.

Infrastructure for extended formulas with multiple parts on the right-hand side and/or multiple responses on the left-hand side (see <DOI:10.18637/jss.v034.i01>).

A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.

Provides efficient low-level and highly reusable S4 classes for storing, manipulating and aggregating over annotated ranges of integers. Implements an algebra of range operations, including efficient algorithms for finding overlaps and nearest neighbors. Defines efficient list-like classes for storing, transforming and aggregating large grouped data, i.e., collections of atomic vectors and DataFrames.

Functions and Datasets to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Second Edition, Sage, 2011.

Display of maps. Projection code and larger maps are in separate packages ('mapproj' and 'mapdata').

This package contains routines and documentation for solving quadratic programming problems.

The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the ...

Tools for HTML generation and output.

Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.