SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

ImageJ2 is a rewrite of ImageJ for multidimensional image data, with a focus on scientific imaging.

ImageJ Operations: a framework for reusable algorithms.

representation of multi-angle, multi-channel (etc.) SPIM images and their registration

A runtime patcher to introduce extension points into the original ImageJ (1.x). This project offers extension points for use with ImageJ2 and it also offers limited support for headless operations.

Old compatibility layer for Fiji.

Server- and client-side communication between ImageJ and OMERO.

JEX Core Functionality