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HTS JDK

A Java API for high-throughput sequencing data (HTS) formats.

Artifacts using HTS JDK (4)
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1.Hadoop BAM26 usages

org.seqdoop » hadoop-bam MIT

A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.
Last Release on Apr 23, 2018

2.ADAM_2.11: Core12 usages

org.bdgenomics.adam » adam-core Apache

ADAM_2.11: Core
Last Release on Jan 4, 2018

Relocated → org.bdgenomics.adam » adam-core-spark2

3.Guacamole: Variant Caller

org.hammerlab.guacamole » guacamole Apache

Guacamole: Variant Caller
Last Release on Dec 20, 2014

4.NGS Tools

org.nmdp.ngs » ngs-tools LGPL

Next generation sequencing (NGS/HTS) command line tools.
Last Release on Jun 22, 2015
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