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HTSJDK » 2.18.2

A Java API for high-throughput sequencing data (HTS) formats

Artifacts using htsjdk version 2.18.2 (11)
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1.ADAM_2.12: Core22 usages

org.bdgenomics.adam » adam-core-spark2 Apache

ADAM_2.12: Core
Last Release on Dec 16, 2020

2.Picard19 usages

com.github.broadinstitute » picard MIT

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Aug 1, 2026

3.DSH Compress17 usages

org.dishevelled » dsh-compress LGPL

Compression utility classes.
Last Release on Oct 25, 2026

4.Disq4 usages

org.disq-bio » disq MIT

A library for manipulating bioinformatics sequencing formats in Apache Spark.
Last Release on May 3, 2021

5.GATK43 usages

org.broadinstitute » gatk Apache

Development on GATK 4
Last Release on Aug 19, 2026

6.Jannovar HTSJDK3 usages

de.charite.compbio » jannovar-htsjdk BSD

jannovar-htsjdk is the module for bridging between Jannovar and HTSJDK
Last Release on Sep 13, 2022

7.Big Data Genomics: Convert HTSJDK2 usages

org.bdgenomics.convert » convert-htsjdk Apache

Conversions between HTSJDK and Big Data Genomics Avro Formats
Last Release on May 19, 2022

8.GATK4 Test Utilities

org.broadinstitute » gatk-test-utils Apache

Development on GATK 4
Last Release on Aug 19, 2026

9.Jannovar Filter

de.charite.compbio » jannovar-filter BSD

jannovar-filter helps with applying threshold-based filters for WES/WGS filters
Last Release on Sep 13, 2022

10.Jannovar Stats

de.charite.compbio » jannovar-stats BSD

jannovar-stats helps in aggregating statistics about variants and variant annotations
Last Release on Sep 13, 2022