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HTSJDK » 2.20.3

A Java API for high-throughput sequencing data (HTS) formats

Artifacts using htsjdk version 2.20.3 (13)
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1.Picard18 usages

com.github.broadinstitute » picard MIT

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Apr 13, 2025

2.DSH Compress17 usages

org.dishevelled » dsh-compress LGPL

Compression utility classes.
Last Release on Jun 20, 2026

3.Jannovar HTSJDK3 usages

de.charite.compbio » jannovar-htsjdk BSD

jannovar-htsjdk is the module for bridging between Jannovar and HTSJDK
Last Release on Sep 13, 2022

4.GATK43 usages

org.broadinstitute » gatk Apache

Development on GATK 4
Last Release on Apr 15, 2025

5.DSH Bio Convert HTSJDK1 usages

org.dishevelled » dsh-bio-convert-htsjdk LGPL

Convert between dishevelled and htsjdk data models.
Last Release on Mar 7, 2023

6.Glow1 usages

io.projectglow » glow Apache

An open-source toolkit for large-scale genomic analysis
Last Release on Jun 23, 2020

7.Fgbio1 usages

com.fulcrumgenomics » fgbio MIT

fgbio
Last Release on May 21, 2026

8.Genomics Dataflow Core Components

com.google.allenday » genomics-dataflow-core Apache

Components for implementation Google Cloud Dataflow piplines to solve genomics processing tasks
Last Release on Oct 18, 2020

9.Jannovar Filter

de.charite.compbio » jannovar-filter BSD

jannovar-filter helps with applying threshold-based filters for WES/WGS filters
Last Release on Sep 13, 2022

10.Jannovar Stats

de.charite.compbio » jannovar-stats BSD

jannovar-stats helps in aggregating statistics about variants and variant annotations
Last Release on Sep 13, 2022