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HTSJDK » 2.5.0

A Java API for high-throughput sequencing data (HTS) formats

Artifacts using htsjdk version 2.5.0 (15)
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1.Hadoop BAM26 usages

org.seqdoop » hadoop-bam MIT

A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.
Last Release on Apr 23, 2018

2.ADAM_2.12: Core22 usages

org.bdgenomics.adam » adam-core-spark2 Apache

ADAM_2.12: Core
Last Release on Dec 16, 2020

3.Picard18 usages

com.github.broadinstitute » picard MIT

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Apr 13, 2025

4.ADAM_2.11: Core12 usages

org.bdgenomics.adam » adam-core Apache

ADAM_2.11: Core
Last Release on Jan 4, 2018

Relocated → org.bdgenomics.adam » adam-core-spark2

5.Jannovar HTSJDK3 usages

de.charite.compbio » jannovar-htsjdk BSD

jannovar-htsjdk is the module for bridging between Jannovar and HTSJDK
Last Release on Sep 13, 2022

6.ADAM Core2 usages

org.hammerlab.adam » adam-core Apache

adam-core
Last Release on Nov 29, 2016

7.Core2 usages

org.hammerlab.adam » core Apache

core
Last Release on Jun 16, 2018

8.GenomicsDB2 usages

com.intel » genomicsdb

Java API and Apache Spark bindings for GenomicsDB
Last Release on Mar 9, 2017

9.Fgbio1 usages

com.fulcrumgenomics » fgbio MIT

fgbio
Last Release on May 21, 2026

10.GenomicsDB GATK4

com.intel » genomicsdb-gatk4

Java API and Apache Spark bindings for GenomicsDB
Last Release on Mar 14, 2017