J3d Core Utilities

3D Viewer for visualizing image stacks three-dimensionally.

The mcib3d library is the core for most of the mcib3d plugins developed.

Standard input and output libraries from Princeton's "Introduction to Programming in Java" textbook.

Trainable Segmentation plugin for Fiji.

Descriptor based registration plugin for Fiji.

GeOxygene SIG 3D GUI

MASON is a fast agent-based simulation library core in Java, designed to be the foundation for large custom-purpose Java simulations, and also to provide more than enough functionality for many lightweight simulation needs.

Ebli 3d

Code examples from Princeton's "Algorithms" textbook, 4th Edition.

TrakEM2 plugin for ImageJ.