Group: SourceForge ONDEX Modules

Oxl

Generic Basic Plug Ins and Components

Tab Tools

Validator

Everything related to poplar.

dna and protein sequence parser for species independent data sources

Taxonomy

A collection of parsers, mapping and transformers to do textmining

Everything related to GO

A collection of protein domain and structure DBs

Prolog

plugins related to the cyc pathway databases

everything to deal with tabular formats

An ONDEX Exporter plugin that exports Ondex Graph data to a JSON file ideal for cytoscapeJS, containing JSON objects which contain data related to concepts (nodes), relations (edges) and other Item Info. (metadata) including Data Sources, Types, Concept Classes, Relation Types, Evidences, Units and more.

Tools to manage RDF export from ONDEX graphs. See src/main/java/net/sourceforge/ondex/rdf/export/package-info.java for details.

A set of plugins concerned the query and traversal of ondex graphs

old plugins

Enzymatics

Some common definitions used in Ondex to deal with RDF (eg, Ondex-related namespaces).

Clustering