Group: SourceForge ONDEX Modules

Sort by:Popular▼

✓Popular✓Newest

An ONDEX Exporter plugin that exports Ondex Graph data to a JSON file containing JSON objects which contain data related to concepts (nodes), relations (edges) and other Item Info. (metadata) including Data Sources, Types, Concept Classes, Relation Types, Evidences, Units and more.

Phenotypes

An Integrator plug-in that allows for invoking a Javascript file from an Integrator workflow. Comes with ONDEX entities available inside the scripting engine, so that you can run the same scripts that are available from the ONDEX Console component. See examples in src/test/resources. You can specify a script to run in a workflow step, as plug-in parameter. Similarly, you can pass parameters to the script, by defining them in the workflow configuration, the script will see them as a global ...

A parser for OWL ontologies

A command-line tool to convert BioKNO-based RDF data into Ondex OXL format

Command-line interface for the RDF Exporter. Note that this is not shipped with Ondex or Mini, if you need the CLI wrapper for the RDF exporter, you've to download it from our Maven repository: http://ondex.rothamsted.ac.uk/nexus/content/groups/public-snapshots/net/sourceforge/ondex/modules/rdf-export-2-cli/ (look for rdf-export-2-cli_XXX.zip).

Aries