SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

JSR-223-compliant BeanShell scripting language plugin.

The executable which runs ImageJ. Its purpose is also to make sure that updates downloaded by the ImageJ Updater will be put into place before starting the Java Virtual Machine.

Volume rendering of bdv datasets

ImageJ plugin that uses automated Sholl to perform neuronal morphometry directly from segmented images and traces from Simple Neurite Tracer

Molecule Archive Suite (Mars) - core data storage and processing algorithms.

Parallelization framework for SciJava applications.

Server- and client-side communication between ImageJ and OMERO.

JSR-223-compliant Scala scripting language plugin.

JSR-223-compliant JRuby scripting language plugin.

Tools for label data.