SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

ImageJ utilities and commands for stitching various datasets

ELEPHANT client application implemented as a Mastodon plugin

JavaFX GUI for processing single-molecule TIRF and FMT data in the Structure and Dynamics of Molecular Machines research group.

The Domain Presentation Layer (DPL) of BoneJ2, i.e. the commands that wrap the needed ops, and present results for skeletal biologists.

A plugin for managing SciJava-based projects.

Python scripting language plugin to be used via scyjava.

Fiji is a distribution of ImageJ for the life sciences.