SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

JavaFX GUI for processing single-molecule TIRF and FMT data in the Structure and Dynamics of Molecular Machines research group.

Fluorescence lifetime analysis in ImageJ.

Open source ImageJ extensions and utilities for transferring ImageJ data structures between MATLAB and an external ImageJ application, or running ImageJ from within MATLAB.

Search plugins to enable BIII search in SciJava.

The Domain Presentation Layer (DPL) of BoneJ2, i.e. the commands that wrap the needed ops, and present results for skeletal biologists.

Mastodon plugin for fitting ellipsoids around spots

Python scripting language plugin to be used via scyjava.

Fiji is a distribution of ImageJ for the life sciences.

TrackMate oneat extension.

TrackMate detector based on Skeletonization.