SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

TrackMate detector based on the Weka trainable segmentation plugin.

Saalfeld lab JavaFX tools and extensions

Mavenized version of the BoneJ1 plugins

TrackMate detector based on the watershed segmentation tool in the MorphoLibJ plugin.

Ops created for BoneJ2

TrackMate detector based on Ilastik.

The implementation of the pixel classification algorithm, that is used the Labkit image segmentation plugin for Fiji.

TrackMate detector based on StarDist.

TrackMate detector based on Cellpose.

ImageJ utilities and commands for stitching various datasets