SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

TrackMate detector based on Ilastik.

TrackMate detector based on Cellpose.

The Domain Presentation Layer (DPL) of BoneJ2, i.e. the commands that wrap the needed ops, and present results for skeletal biologists.

Python scripting language plugin to be used via scyjava.

Fiji is a distribution of ImageJ for the life sciences.