SciJava Configuration is a shared collection of files for SciJava software. It provides configuration files for common SciJava dependencies, such as logback and slf4j.

ImageJ2 is a rewrite of ImageJ for multidimensional image data, with a focus on scientific imaging.

Fiji is a distribution of ImageJ for the life sciences.

QuimP software, a set of plugins for ImageJ to quantify spatio-temporal patterns of fluorescently labeled proteins in the cortex of moving cells.