
SciJava user interface components for Java Swing.

Script Editor and Interpreter for SciJava script languages.
Last Release on Sep 29, 2026

SciView
Last Release on Oct 14, 2026

Molecule Archive Suite (Mars) - core data storage and processing algorithms.
Last Release on Jul 24, 2026

BigDataViewer tools and plugins for Fiji: fusion, deconvolution, registration and data processing.
Last Release on Oct 14, 2026

Wrappers for ImageJ: Elastix, Transformix, Ilastik (add next here).
Last Release on Feb 26, 2025

Basic tracking algorithms based on Mastodon data structures.
Last Release on Jan 26, 2025

Scenery-backed 3D visualization package for ImageJ.
Last Release on Oct 20, 2026

This is the bioimage.io modelzoo library for ImageJ.
Last Release on Sep 9, 2021

Collection of tools to register images to atlases in Fiji.
Last Release on Oct 14, 2026

The Domain Presentation Layer (DPL) of BoneJ2, i.e. the commands that wrap the needed ops,
and present results for skeletal biologists.
Last Release on Jun 28, 2026