Script Editor and Interpreter for SciJava script languages.

ImageJ2 is a rewrite of ImageJ for multidimensional image data, with a focus on scientific imaging.

The legacy component enables backward compatibility with the original version of ImageJ (1.x). It contains the code necessary to translate between ImageJ and ImageJ2 images, so that ImageJ plugins can be executed faithfully.

JIPipe Core

flexible scenegraphing and rendering for scientific visualisation

flexible scenegraphing and rendering for scientific visualisation

Scenery-backed 3D visualization package for ImageJ.

ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related.

The framework for quantification of neuronal anatomy

Opens OME-Zarr datasets in ImageJ and BigDataViewer (PyramidalDataset / PyramidalBdv) without UI sugar. Backend-agnostic: requires an ome-zarr-n5 or ome-zarr-zarrjava backend at runtime.

ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related.