SciJava user interface components for Java Swing.

The legacy component enables backward compatibility with the original version of ImageJ (1.x). It contains the code necessary to translate between ImageJ and ImageJ2 images, so that ImageJ plugins can be executed faithfully.

BigDataViewer Actions and GUI

Big data viewer tools BIOP - EPFL

The framework for quantification of neuronal anatomy

Wrappers for ImageJ: Elastix, Transformix, Ilastik (add next here).

A Batch Processor for SciJava Modules and Scripts

Collection of tools to register images to atlases in Fiji.

Scijava plugin for colocalization

Scijava plugin for spatial correlation

The Domain Presentation Layer (DPL) of BoneJ2, i.e. the commands that wrap the needed ops, and present results for skeletal biologists.