A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
| Version ▼ | Vulnerabilities | Repository | Usages | Date | |
|---|---|---|---|---|---|
3.5.x | 3.5.0 | Central |
0
| Aug 01, 2026 | |
3.4.x | 3.4.0 | Central | Apr 13, 2025 | ||
3.3.x | 3.3.0 | Central | Oct 09, 2024 | ||
3.2.x | 3.2.0 | Central | Jun 27, 2024 | ||
3.1.x | 3.1.1 | Central | Nov 15, 2023 | ||
| 3.1.0 | Central |
0
| Jul 28, 2023 | ||
3.0.x | 3.0.0 | Central | Feb 22, 2023 | ||
2.27.x | 2.27.5 | Central | Oct 06, 2022 | ||
| 2.27.4 | Central |
0
| Jun 29, 2022 | ||
| 2.27.3 | Central |
0
| Jun 09, 2022 | ||
| 2.27.2 | Central |
0
| May 25, 2022 | ||
| 2.27.1 | Central | Apr 07, 2022 | |||
| 2.27.0 | Central |
0
| Apr 06, 2022 | ||
2.26.x | 2.26.11 | Central | Feb 24, 2022 | ||
| 2.26.10 | Central | Jan 03, 2022 | |||
| 2.26.9 | Central |
0
| Dec 21, 2021 | ||
| 2.26.8 | Central | Dec 16, 2021 | |||
| 2.26.7 | Central | Dec 14, 2021 | |||
| 2.26.6 | Central |
0
| Nov 24, 2021 | ||
| 2.26.5 | Central |
0
| Nov 10, 2021 | ||
| 2.26.4 | Central | Oct 27, 2021 | |||
| 2.26.3 | Central |
0
| Oct 12, 2021 | ||
| 2.26.2 | Central |
0
| Sep 09, 2021 | ||
| 2.26.1 | Central | Sep 02, 2021 | |||
| 2.26.0 | Central |
0
| Aug 18, 2021 | ||
2.25.x | 2.25.7 | Central | Jul 21, 2021 | ||
| 2.25.6 | Central |
0
| Jun 14, 2021 | ||
| 2.25.5 | Central | May 18, 2021 | |||
| 2.25.4 | Central | May 03, 2021 | |||
| 2.25.3 | Central |
0
| Apr 29, 2021 | ||
| 2.25.2 | Central | Apr 09, 2021 | |||
| 2.25.1 | Central | Mar 24, 2021 | |||
| 2.25.0 | Central | Feb 10, 2021 | |||
2.24.x | 2.24.2 | Central |
0
| Feb 03, 2021 | |
| 2.24.1 | Central |
0
| Jan 21, 2021 | ||
| 2.24.0 | Central | Jan 04, 2021 | |||
2.23.x | 2.23.9 | Central |
0
| Dec 08, 2020 | |
| 2.23.8 | Central | Oct 14, 2020 | |||
| 2.23.7 | Central | Oct 13, 2020 | |||
| 2.23.6 | Central | Sep 30, 2020 | |||
| 2.23.5 | Central |
0
| Sep 29, 2020 | ||
| 2.23.4 | Central |
0
| Sep 03, 2020 | ||
| 2.23.3 | Central | Jul 20, 2020 | |||
| 2.23.2 | Central | Jul 09, 2020 | |||
| 2.23.1 | Central | Jun 23, 2020 | |||
| 2.23.0 | Central | Jun 09, 2020 | |||
2.22.x | 2.22.9 | Central | Jun 02, 2020 | ||
| 2.22.8 | Central | May 21, 2020 | |||
| 2.22.7 | Central | May 18, 2020 | |||
| 2.22.6 | Central | May 13, 2020 | |||
| 2.22.5 | Central |
0
| May 11, 2020 | ||
| 2.22.4 | Central |
0
| Apr 28, 2020 | ||
| 2.22.3 | Central |
0
| Apr 08, 2020 | ||
| 2.22.2 | Central | Mar 30, 2020 | |||
| 2.22.1 | Central |
0
| Mar 16, 2020 | ||
| 2.22.0 | Central |
0
| Feb 27, 2020 | ||
2.21.x | 2.21.9 | Central | Feb 18, 2020 | ||
| 2.21.8 | Central |
0
| Feb 04, 2020 | ||
| 2.21.7 | Central |
0
| Jan 21, 2020 | ||
| 2.21.6 | Central |
0
| Dec 19, 2019 | ||
| 2.21.5 | Central |
0
| Dec 18, 2019 | ||
| 2.21.4 | Central |
0
| Nov 26, 2019 | ||
| 2.21.3 | Central |
0
| Nov 12, 2019 | ||
| 2.21.2 | Central | Oct 28, 2019 | |||
| 2.21.1 | Central | Oct 01, 2019 | |||
2.20.x | 2.20.8 | Central | Sep 16, 2019 | ||
| 2.20.7 | Central | Sep 03, 2019 | |||
| 2.20.6 | Central |
0
| Aug 20, 2019 | ||
| 2.20.5 | Central | Aug 05, 2019 | |||
| 2.20.4 | Central | Jul 22, 2019 | |||
| 2.20.3 | Central | Jul 01, 2019 | |||
| 2.20.2 | Central | May 28, 2019 | |||
| 2.20.1 | Central | May 14, 2019 | |||
| 2.20.0 | Central |
0
| May 01, 2019 | ||
2.19.x | 2.19.2 | Central | Apr 23, 2019 | ||
| 2.19.1 | Central |
0
| Apr 18, 2019 | ||
| 2.19.0 | Central | Mar 26, 2019 | |||
2.18.x | 2.18.29 | Central |
0
| Mar 19, 2019 | |
| 2.18.28 | Central |
0
| Mar 06, 2019 | ||
| 2.18.27 | Central |
0
| Feb 22, 2019 | ||
| 2.18.26 | Central | Feb 04, 2019 | |||
| 2.18.25 | Central | Jan 23, 2019 | |||
| 2.18.24 | Central |
0
| Jan 22, 2019 | ||
| 2.18.23 | Central |
0
| Jan 07, 2019 | ||
| 2.18.22 | Central |
0
| Jan 01, 2019 | ||
| 2.18.21 | Central |
0
| Dec 17, 2018 | ||
| 2.18.20 | Central | Dec 05, 2018 | |||
| 2.18.19 | Central | Dec 03, 2018 | |||
| 2.18.18 | Central |
0
| Dec 04, 2018 | ||
| 2.18.17 | Central |
0
| Nov 20, 2018 | ||
| 2.18.16 | Central | Nov 05, 2018 | |||
| 2.18.15 | Central |
0
| Sep 25, 2018 | ||
| 2.18.14 | Central | Sep 12, 2018 | |||
| 2.18.13 | Central | Sep 10, 2018 | |||
| 2.18.12 | Central | Aug 28, 2018 | |||
| 2.18.11 | Central | Jul 23, 2018 | |||
| 2.18.10 | Central | Jul 19, 2018 | |||
| 2.18.9 | Central | Jul 02, 2018 | |||
| 2.18.8 | Central |
0
| Jul 02, 2018 | ||
| 2.18.7 | Central | Jun 07, 2018 | |||
| 2.18.6 | Central |
0
| Jun 04, 2018 | ||
| 2.18.5 | Central |
0
| May 24, 2018 | ||
| 2.18.4 | Central |
0
| Apr 30, 2018 | ||
| 2.18.3 | Central |
0
| Apr 24, 2018 | ||
| 2.18.2 | Central | Apr 04, 2018 | |||
| 2.18.1 | Central |
0
| Mar 26, 2018 | ||
| 2.18.0 | Central |
0
| Mar 19, 2018 | ||
2.17.x | 2.17.11 | Central |
0
| Feb 27, 2018 | |
| 2.17.10 | Central |
0
| Feb 13, 2018 | ||
| 2.17.9 | Central |
0
| Feb 12, 2018 | ||
| 2.17.8 | Central |
0
| Feb 05, 2018 | ||
| 2.17.7 | Central |
0
| Feb 05, 2018 | ||
| 2.17.6 | Central |
0
| Jan 29, 2018 | ||
| 2.17.5 | Central |
0
| Jan 26, 2018 | ||
| 2.17.4 | Central |
0
| Jan 18, 2018 | ||
| 2.17.3 | Central |
0
| Jan 09, 2018 | ||
| 2.17.2 | Central | Jan 07, 2018 | |||
| 2.17.1 | Central | Jan 02, 2018 | |||
| 2.17.0 | Central |
0
| Dec 19, 2017 | ||
2.16.x | 2.16.0 | Central |
0
| Dec 05, 2017 | |
2.15.x | 2.15.0 | Central |
0
| Nov 13, 2017 | |
2.14.x | 2.14.1 | Central | Nov 06, 2017 | ||
| 2.14.0 | Central |
0
| Oct 23, 2017 | ||
| 2.14 | Central |
0
| Oct 23, 2017 | ||
2.13.x | 2.13.2 | Central |
0
| Oct 03, 2017 | |
| 2.13.1 | Central |
0
| Oct 02, 2017 | ||
| 2.13 | Central |
0
| Oct 02, 2017 | ||
2.12.x | 2.12.2 | Central |
0
| Sep 27, 2017 | |
| 2.12.1 | Central |
0
| Sep 11, 2017 | ||
| 2.12.0 | Central |
0
| Sep 07, 2017 | ||
2.11.x | 2.11.0 | Central | Aug 28, 2017 | ||
2.10.x | 2.10.10 | Central |
0
| Aug 16, 2017 | |
| 2.10.9 | Central |
0
| Aug 08, 2017 | ||
| 2.10.8 | Central |
0
| Aug 08, 2017 | ||
| 2.10.7 | Central |
0
| Aug 03, 2017 | ||
| 2.10.6 | Central |
0
| Jul 31, 2017 | ||
| 2.10.5 | Central |
0
| Jul 26, 2017 | ||
| 2.10.4 | Central |
0
| Jul 25, 2017 | ||
| 2.10.3 | Central |
0
| Jul 18, 2017 | ||
| 2.10.2 | Central |
0
| Jul 13, 2017 | ||
| 2.10.1 | Central |
0
| Jul 11, 2017 | ||
| 2.10.0 | Central |
0
| Jul 05, 2017 | ||
2.9.x | 2.9.5 | Central |
0
| Jul 05, 2017 | |
| 2.9.4 | Central |
0
| Jun 15, 2017 | ||
| 2.9.3 | Central |
0
| Jun 14, 2017 | ||
| 2.9.2 | Central |
0
| May 08, 2017 | ||
| 2.9.1 | Central |
0
| May 03, 2017 | ||
| 2.9.0 | Central |
0
| Feb 21, 2017 | ||
2.8.x | 2.8.3 | Central |
0
| Feb 06, 2017 | |
| 2.8.2 | Central |
0
| Jan 23, 2017 | ||
| 2.8.1 | Central | Dec 22, 2016 | |||
| 2.8.0 | Central |
0
| Dec 08, 2016 | ||
2.7.x | 2.7.2 | Central |
0
| Dec 07, 2016 | |
| 2.7.1 | Central |
0
| Oct 25, 2016 | ||
| 2.7.0 | Central |
0
| Oct 17, 2016 | ||
2.6.x | 2.6.0 | Central | Aug 08, 2016 | ||
2.5.x | 2.5.0 | Central |
0
| Jun 23, 2016 | |
2.4.x | 2.4.1 | Central |
0
| May 28, 2016 | |
2.3.x | 2.3.0 | Central |
0
| May 12, 2016 | |
2.2.x | 2.2.4 | Central |
0
| Apr 27, 2016 | |
| 2.2.3 | Central |
0
| Apr 27, 2016 | ||
| 2.2.2 | Central |
0
| Apr 20, 2016 | ||
| 2.2.1 | Central |
0
| Apr 05, 2016 | ||
| 2.2.0 | Central |
0
| Apr 05, 2016 | ||
2.1.x | 2.1.1 | Central |
0
| Mar 04, 2016 | |
| 2.1.0 | Central | Feb 06, 2016 | |||
2.0.x | 2.0.1 | Central |
0
| Dec 04, 2015 | |
| 2.0.0 | Central |
0
| Dec 03, 2015 | ||
1.143.x | 1.143 | Central |
0
| Dec 03, 2015 | |
1.142.x | 1.142 | Central |
0
| Dec 03, 2015 | |
1.141.x | 1.141 | Central |
0
| Nov 16, 2015 | |
1.140.x | 1.140 | Central | Oct 07, 2015 | ||
1.139.x | 1.139 | Central |
0
| Sep 14, 2015 | |
1.138.x | 1.138 | Central |
0
| Aug 11, 2015 | |
1.137.x | 1.137 | Central |
0
| Jul 27, 2015 | |
1.136.x | 1.136 | Central |
0
| Jul 13, 2015 | |
1.135.x | 1.135 | Central |
0
| Jun 29, 2015 | |
1.134.x | 1.134 | Central |
0
| Jun 11, 2015 | |
1.133.x | 1.133 | Central | Jun 01, 2015 | ||
1.131.x | 1.131 | Central |
0
| May 07, 2015 | |
1.130.x | 1.130 | Central |
0
| Mar 24, 2015 | |
1.129.x | 1.129 | Central |
0
| Mar 23, 2015 |