A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
VersionVulnerabilitiesRepositoryUsagesDate
3.5.x
3.5.0Central
0
Aug 01, 2026
3.4.x
3.4.0CentralApr 13, 2025
3.3.x
3.3.0CentralOct 09, 2024
3.2.x
3.2.0CentralJun 27, 2024
3.1.x
3.1.1CentralNov 15, 2023
3.1.0Central
0
Jul 28, 2023
3.0.x
3.0.0CentralFeb 22, 2023
2.27.x
2.27.5CentralOct 06, 2022
2.27.4Central
0
Jun 29, 2022
2.27.3Central
0
Jun 09, 2022
2.27.2Central
0
May 25, 2022
2.27.1CentralApr 07, 2022
2.27.0Central
0
Apr 06, 2022
2.26.x
2.26.11CentralFeb 24, 2022
2.26.10CentralJan 03, 2022
2.26.9Central
0
Dec 21, 2021
2.26.8CentralDec 16, 2021
2.26.7CentralDec 14, 2021
2.26.6Central
0
Nov 24, 2021
2.26.5Central
0
Nov 10, 2021
2.26.4CentralOct 27, 2021
2.26.3Central
0
Oct 12, 2021
2.26.2Central
0
Sep 09, 2021
2.26.1CentralSep 02, 2021
2.26.0Central
0
Aug 18, 2021
2.25.x
2.25.7CentralJul 21, 2021
2.25.6Central
0
Jun 14, 2021
2.25.5CentralMay 18, 2021
2.25.4CentralMay 03, 2021
2.25.3Central
0
Apr 29, 2021
2.25.2CentralApr 09, 2021
2.25.1CentralMar 24, 2021
2.25.0CentralFeb 10, 2021
2.24.x
2.24.2Central
0
Feb 03, 2021
2.24.1Central
0
Jan 21, 2021
2.24.0CentralJan 04, 2021
2.23.x
2.23.9Central
0
Dec 08, 2020
2.23.8CentralOct 14, 2020
2.23.7CentralOct 13, 2020
2.23.6CentralSep 30, 2020
2.23.5Central
0
Sep 29, 2020
2.23.4Central
0
Sep 03, 2020
2.23.3CentralJul 20, 2020
2.23.2CentralJul 09, 2020
2.23.1CentralJun 23, 2020
2.23.0CentralJun 09, 2020
2.22.x
2.22.9CentralJun 02, 2020
2.22.8CentralMay 21, 2020
2.22.7CentralMay 18, 2020
2.22.6CentralMay 13, 2020
2.22.5Central
0
May 11, 2020
2.22.4Central
0
Apr 28, 2020
2.22.3Central
0
Apr 08, 2020
2.22.2CentralMar 30, 2020
2.22.1Central
0
Mar 16, 2020
2.22.0Central
0
Feb 27, 2020
2.21.x
2.21.9CentralFeb 18, 2020
2.21.8Central
0
Feb 04, 2020
2.21.7Central
0
Jan 21, 2020
2.21.6Central
0
Dec 19, 2019
2.21.5Central
0
Dec 18, 2019
2.21.4Central
0
Nov 26, 2019
2.21.3Central
0
Nov 12, 2019
2.21.2CentralOct 28, 2019
2.21.1CentralOct 01, 2019
2.20.x
2.20.8CentralSep 16, 2019
2.20.7CentralSep 03, 2019
2.20.6Central
0
Aug 20, 2019
2.20.5CentralAug 05, 2019
2.20.4CentralJul 22, 2019
2.20.3CentralJul 01, 2019
2.20.2CentralMay 28, 2019
2.20.1CentralMay 14, 2019
2.20.0Central
0
May 01, 2019
2.19.x
2.19.2CentralApr 23, 2019
2.19.1Central
0
Apr 18, 2019
2.19.0CentralMar 26, 2019
2.18.x
2.18.29Central
0
Mar 19, 2019
2.18.28Central
0
Mar 06, 2019
2.18.27Central
0
Feb 22, 2019
2.18.26CentralFeb 04, 2019
2.18.25CentralJan 23, 2019
2.18.24Central
0
Jan 22, 2019
2.18.23Central
0
Jan 07, 2019
2.18.22Central
0
Jan 01, 2019
2.18.21Central
0
Dec 17, 2018
2.18.20CentralDec 05, 2018
2.18.19CentralDec 03, 2018
2.18.18Central
0
Dec 04, 2018
2.18.17Central
0
Nov 20, 2018
2.18.16CentralNov 05, 2018
2.18.15Central
0
Sep 25, 2018
2.18.14CentralSep 12, 2018
2.18.13CentralSep 10, 2018
2.18.12CentralAug 28, 2018
2.18.11CentralJul 23, 2018
2.18.10CentralJul 19, 2018
2.18.9CentralJul 02, 2018
2.18.8Central
0
Jul 02, 2018
2.18.7CentralJun 07, 2018
2.18.6Central
0
Jun 04, 2018
2.18.5Central
0
May 24, 2018
2.18.4Central
0
Apr 30, 2018
2.18.3Central
0
Apr 24, 2018
2.18.2CentralApr 04, 2018
2.18.1Central
0
Mar 26, 2018
2.18.0Central
0
Mar 19, 2018
2.17.x
2.17.11Central
0
Feb 27, 2018
2.17.10Central
0
Feb 13, 2018
2.17.9Central
0
Feb 12, 2018
2.17.8Central
0
Feb 05, 2018
2.17.7Central
0
Feb 05, 2018
2.17.6Central
0
Jan 29, 2018
2.17.5Central
0
Jan 26, 2018
2.17.4Central
0
Jan 18, 2018
2.17.3Central
0
Jan 09, 2018
2.17.2CentralJan 07, 2018
2.17.1CentralJan 02, 2018
2.17.0Central
0
Dec 19, 2017
2.16.x
2.16.0Central
0
Dec 05, 2017
2.15.x
2.15.0Central
0
Nov 13, 2017
2.14.x
2.14.1CentralNov 06, 2017
2.14.0Central
0
Oct 23, 2017
2.14Central
0
Oct 23, 2017
2.13.x
2.13.2Central
0
Oct 03, 2017
2.13.1Central
0
Oct 02, 2017
2.13Central
0
Oct 02, 2017
2.12.x
2.12.2Central
0
Sep 27, 2017
2.12.1Central
0
Sep 11, 2017
2.12.0Central
0
Sep 07, 2017
2.11.x
2.11.0CentralAug 28, 2017
2.10.x
2.10.10Central
0
Aug 16, 2017
2.10.9Central
0
Aug 08, 2017
2.10.8Central
0
Aug 08, 2017
2.10.7Central
0
Aug 03, 2017
2.10.6Central
0
Jul 31, 2017
2.10.5Central
0
Jul 26, 2017
2.10.4Central
0
Jul 25, 2017
2.10.3Central
0
Jul 18, 2017
2.10.2Central
0
Jul 13, 2017
2.10.1Central
0
Jul 11, 2017
2.10.0Central
0
Jul 05, 2017
2.9.x
2.9.5Central
0
Jul 05, 2017
2.9.4Central
0
Jun 15, 2017
2.9.3Central
0
Jun 14, 2017
2.9.2Central
0
May 08, 2017
2.9.1Central
0
May 03, 2017
2.9.0Central
0
Feb 21, 2017
2.8.x
2.8.3Central
0
Feb 06, 2017
2.8.2Central
0
Jan 23, 2017
2.8.1CentralDec 22, 2016
2.8.0Central
0
Dec 08, 2016
2.7.x
2.7.2Central
0
Dec 07, 2016
2.7.1Central
0
Oct 25, 2016
2.7.0Central
0
Oct 17, 2016
2.6.x
2.6.0CentralAug 08, 2016
2.5.x
2.5.0Central
0
Jun 23, 2016
2.4.x
2.4.1Central
0
May 28, 2016
2.3.x
2.3.0Central
0
May 12, 2016
2.2.x
2.2.4Central
0
Apr 27, 2016
2.2.3Central
0
Apr 27, 2016
2.2.2Central
0
Apr 20, 2016
2.2.1Central
0
Apr 05, 2016
2.2.0Central
0
Apr 05, 2016
2.1.x
2.1.1Central
0
Mar 04, 2016
2.1.0CentralFeb 06, 2016
2.0.x
2.0.1Central
0
Dec 04, 2015
2.0.0Central
0
Dec 03, 2015
1.143.x
1.143Central
0
Dec 03, 2015
1.142.x
1.142Central
0
Dec 03, 2015
1.141.x
1.141Central
0
Nov 16, 2015
1.140.x
1.140CentralOct 07, 2015
1.139.x
1.139Central
0
Sep 14, 2015
1.138.x
1.138Central
0
Aug 11, 2015
1.137.x
1.137Central
0
Jul 27, 2015
1.136.x
1.136Central
0
Jul 13, 2015
1.135.x
1.135Central
0
Jun 29, 2015
1.134.x
1.134Central
0
Jun 11, 2015
1.133.x
1.133CentralJun 01, 2015
1.131.x
1.131Central
0
May 07, 2015
1.130.x
1.130Central
0
Mar 24, 2015
1.129.x
1.129Central
0
Mar 23, 2015