MCP server giving LLM agents access to microscopy image data via Bio-Formats

Compile Dependencies (13)

Category/LicenseGroup / ArtifactVersionUpdates
Data Format BSD 3-clause
com.google.protobuf » protobuf-java
Core Protocol Buffers library. Protocol Buffers are a way of encoding structured data in an
3.25.84.36.1
Apache 2.0
com.tdunning » t-digest
Data structure which allows accurate estimation of quantiles and related rank statistics
3.3
CLI Parser Apache 2.0
commons-cli » commons-cli
Apache Commons CLI provides a simple API for presenting, processing, and validating a Command Line Interface.
1.11.0
MIT
dev.zarr » zarr-java
zarr-java is a Java library providing an implementation of chunked,
0.1.30.3.0
Dist Communication Apache 2.0
io.grpc » grpc-netty-shaded
gRPC: Netty Shaded
1.81.01.84.0
Serializer Apache 2.0
io.grpc » grpc-protobuf
gRPC: Protobuf
1.81.01.84.0
Dist Communication Apache 2.0
io.grpc » grpc-stub
Stub classes for GRPC which are exposed to developers and provides type-safe bindings.
1.81.01.84.0
MCP MIT
io.modelcontextprotocol.sdk » mcp
Java SDK implementation of the Model Context Protocol, enabling seamless integration with language models and AI tools
1.1.02.0.1
GPL 2.0
ome » formats-gpl
A library for reading and writing popular microscopy file formats.
8.4.08.5.0
Math Lib Apache 2.0
org.apache.commons » commons-math3
Alternate implementations of JDK's "Math" functions.
3.6.14.0-beta1
String Utils Apache 2.0
org.apache.commons » commons-text
The Commons Text library provides additions to the standard JDK text handling. It includes algorithms for string ...
1.13.01.15.0
Apache 2.0
org.apache.tomcat » annotations-api
Annotations Package
6.0.5311.0.26
Logging MIT
org.slf4j » slf4j-simple
Binding/provider for SLF4J, which outputs all events to System.err. Only messages of level INFO and higher are printed.
2.0.162.0.19