SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

ImageJ2 is a rewrite of ImageJ for multidimensional image data, with a focus on scientific imaging.

The legacy component enables backward compatibility with the original version of ImageJ (1.x). It contains the code necessary to translate between ImageJ and ImageJ2 images, so that ImageJ plugins can be executed faithfully.

Script Editor and Interpreter for SciJava script languages.

Table structures for SciJava.

TrackMate plugin for Fiji.

Compatibility layer for using un-converted Bio-Formats readers in SCIFIO applications.

flexible scenegraphing and rendering for scientific visualisation

SCIFIO support for the OME data model, including OME-XML and OME-TIFF.

Scenery-backed 3D visualization package for ImageJ.

Server- and client-side communication between ImageJ and OMERO.