SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

flexible scenegraphing and rendering for scientific visualisation

Scenery-backed 3D visualization package for ImageJ.

I/O plugins for SciJava table objects.

clij

Various Java code for ImageJ

Big data viewer tools BIOP - EPFL

The executable which runs ImageJ. Its purpose is also to make sure that updates downloaded by the ImageJ Updater will be put into place before starting the Java Virtual Machine.

Molecule Archive Suite (Mars) - core data storage and processing algorithms.

A collection of tools for converting between spatial transforms of various parametrizations / formats

IJ2 commands that use bio-formats to create pyramidal ome.tiff