SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

IJ2 commands that use bio-formats to create pyramidal ome.tiff

Support of TIFF files: reading, writing, editing, etc.

Volume rendering of bdv datasets with gamma and transparency option

Saalfeld lab JavaFX tools and extensions

BigDataViewer backend for N5, Zarr, etc.

The implementation of the pixel classification algorithm, that is used the Labkit image segmentation plugin for Fiji.

JavaFX GUI for processing single-molecule TIRF and FMT data in the Structure and Dynamics of Molecular Machines research group.

Mars kymograph builder.

New Era Painting and annotation tool

Mastodon plugin for fitting ellipsoids around spots