Math functions for the Java 3D Graphics API

3D Viewer for visualizing image stacks three-dimensionally.

TrackMate plugin for Fiji.

ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related.

The framework for quantification of neuronal anatomy

Trainable Segmentation plugin for Fiji.

This project serves purely for phasing out ImgLib1 in favor of ImgLib2.

Utility methods for BoneJ2

TrakEM2 plugin for ImageJ.

VIB plugin for Fiji.

Mavenized version of the BoneJ1 plugins