SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

A Fiji plugin to easily visualize OME metadata.

PIV analyser plugin for Fiji.

TrackMate detector based on Cellpose.

TrackMate detector based on Ilastik.

TrackMate detector based on the watershed segmentation tool in the MorphoLibJ plugin.

TrackMate detector based on StarDist.

TrackMate tracker integrating the Trackastra Python tool.

TrackMate detector based on the Weka trainable segmentation plugin.

The implementation of the pixel classification algorithm, that is used the Labkit image segmentation plugin for Fiji.

Opens OME-Zarr datasets in ImageJ and BigDataViewer (PyramidalDataset / PyramidalBdv) without UI sugar. Backend-agnostic: requires an ome-zarr-n5 or ome-zarr-zarrjava backend at runtime.