SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

Scenery-backed 3D visualization package for ImageJ.

A CLI for introspecting SciJava/ImageJ2 commands, used to build MCP servers and documentation for Fiji

The Cx3D modeling framework in SciView and SNT.

Python scripting language plugin to be used via scyjava.

VIB plugin for Fiji.

JavaFX GUI for processing single-molecule TIRF and FMT data in the Structure and Dynamics of Molecular Machines research group.

Mars command and definitions for transverse flow molecule types.

A Batch Processor for SciJava Modules and Scripts

Image processing operations for SciJava Ops.

Core text format plugin for Markdown.